Jim Procter
2018-09-10 11:39:50 UTC
Dear Jalviewers
Jalview 2.10.5 is now available from www.jalview.org.
Version 2.10.5 is a minor release that includes critical patches for
users working with Ensembl, RNA secondary structure annotation, and
those running Jalview on OSX with Java 10. The highlights are:
* Jalview's default memory limit increased to 1G. If you have problems
starting Jalview 2.10.5 and you have 1G or less physical memory on your
machine, you will need to reduce the memory allocated to Jalview.
* EPS, PNG and SVG export now includes hidden sequence markers, and
representative sequences are marked in bold.
* Ensembl Client updated for Ensembl Rest API v7.
* Improved support for VIENNA extended dot-bracket notation for RNA
secondary structure
* Positional and selected region highlighting in VARNA 'trimmed
sequence' view now more reliable
* Fix for bug affecting OSX users with Java 10 that prevents files being
saved correctly through the 'Save As' dialog box.
The majority of bug fixes and improvements in 2.10.5 are due to Jalview
users contacting us via the jalview-discuss email list. Thanks to
everyone who took the time to help make Jalview better !
Happy Jalviewing
Jim, Ben, Mungo, Suzanne and Geoff.
Jalview 2.10.5 is now available from www.jalview.org.
Version 2.10.5 is a minor release that includes critical patches for
users working with Ensembl, RNA secondary structure annotation, and
those running Jalview on OSX with Java 10. The highlights are:
* Jalview's default memory limit increased to 1G. If you have problems
starting Jalview 2.10.5 and you have 1G or less physical memory on your
machine, you will need to reduce the memory allocated to Jalview.
* EPS, PNG and SVG export now includes hidden sequence markers, and
representative sequences are marked in bold.
* Ensembl Client updated for Ensembl Rest API v7.
* Improved support for VIENNA extended dot-bracket notation for RNA
secondary structure
* Positional and selected region highlighting in VARNA 'trimmed
sequence' view now more reliable
* Fix for bug affecting OSX users with Java 10 that prevents files being
saved correctly through the 'Save As' dialog box.
The majority of bug fixes and improvements in 2.10.5 are due to Jalview
users contacting us via the jalview-discuss email list. Thanks to
everyone who took the time to help make Jalview better !
Happy Jalviewing
Jim, Ben, Mungo, Suzanne and Geoff.
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Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, School of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
+44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk
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Dr JB Procter, Jalview Coordinator, The Barton Group
Division of Computational Biology, School of Life Sciences
University of Dundee, Dundee DD1 5EH, UK.
+44 1382 388734 | www.jalview.org | www.compbio.dundee.ac.uk